Publications

For my full list of publications, please visit my Google Scholar Page.

Notable publications

ShinyCell: simple and sharable visualization of single-cell gene expression data

JF Ouyang, US Kamaraj, EY Cao, OJL Rackham† Bioinformatics 19, 3374–3376 (2021) Link

Modelling human blastocysts by reprogramming fibroblasts into iBlastoids

X Liu*, JP Tan*, J Schröder, A Aberkane, JF Ouyang, M Mohenska, SM Lim, YBY Sun, J Chen, G Sun, Y Zhou, D Poppe, R Lister, AT Clark, OJL Rackham, J Zenker, JM Polo† Nature 591, 627–632 (2021) Link

Evaluating Capture Sequence Performance for Single-Cell CRISPR Activation Experiments

XY Choo, YM Lim, K Katwadi, L Yap, K Tryggvason, AX Sun, S Li, L Handoko, JF Ouyang†, OJL Rackham† ACS Synthetic Biology 10, 640–645 (2021) Link

Reprogramming roadmap reveals route to human induced trophoblast stem cells

X Liu*, JF Ouyang*, FJ Rossello*, JP Tan, KC Davidson, DS Valdes, J Schröder, YBY Sun, J Chen, AS Knaupp, G Sun, HS Chy, Z Huang, J Pflueger, J Firas, V Tano, S Buckberry, JM Paynter, MR Larcombe, D Poppe, XY Choo, CM O’Brien, WA Pastor, D Chen, AL Leichter, H Naeem, P Tripathi, PP Das, A Grubman, DR Powell, AL Laslett, L David, SK Nilsson, AT Clark, R Lister, CM Nefzger, LG Martelotto, OJL Rackham†, JM Polo† Nature 586, 101–107 (2020) link

A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease reveals cell-type-specific gene expression regulation

A Grubman*, G Chew*, JF Ouyang*, G Sun, XY Choo, C McLean, RK Simmons, S Buckberry, DB Vargas-Landin, D Poppe, J Pflueger, R Lister, OJL Rackham†, E Petretto†, JM Polo† Nature Neuroscience 22, 2087–2097 (2019) link

Molecular interaction networks to select factors for cell conversion

JF Ouyang, US Kamaraj, JM Polo, J Gough, OJL Rackham† Book chapter in Methods in Molecular Biology: Computational Stem Cell Biology 333–361 (2019) link